Web3 de dez. de 2024 · addLogo: Add motif logo to RcisTarget results table addMotifAnnotation: Add motif annotation addSignificantGenes: Add significant genes aucScores-class: Class to store the AUC scores for RcisTarget. calcAUC: Calculate AUC convertToTargetRegions: convertToTargetRegions dbRegionsLoc: Genomic location for the database regions … Web22 de jan. de 2024 · There are two types of regulons in SCENIC, one is ‘core TF name’_ ‘extended’_ ‘number of target genes’, like ‘HLF_extended_15 g’, representing a gene regulatory network composed of transcription factors and all target genes, the other is ‘core TF name’_ ‘number of target genes’, like MECOM (29 g), on behalf of a gene regulatory …
aertslab/SCENIC: vignettes/detailedStep_2_createRegulons.Rmd
Web5 de nov. de 2024 · Build and score the GRN. GENIE3/GRNBoost 完成后,就可以使用SCENIC推断基因调控网路(Gene Regulatory Network, GRN). SCENIC的流程包括:. 获取基因共表达模块. 获取调控子 (with RcisTarget) 对每个细胞的GRN进行打分 (with AUCell) 根据GRN的活性对细胞进行聚类. loom <- open_loom(loomPath ... WebR/runSCENIC_2_createRegulons_Original.R defines the following functions: birthday cake bentonville ar
showLogo : Show RcisTarget as HTML
Web1 de jun. de 2024 · 构建基因调控网络gene regulatory network (GRN):. 1),根据共表达确定每个 TF 的潜在靶基因:过滤表达式矩阵并运行 GENIE3/GRNBoost;. 基于共表达推断转录因子与候选靶基因之间的共表达模块。. 2),使用RcisTarget对每个共表达模块进行顺式调控基序(cis-regulatory motif ... Web您可以通过点击 Elabscience信号通路图的各个节点查找相关产品信息。. ERK是MAPK (Mitogen-activated Protein Kinase,丝裂原活化蛋白激酶)家族的一员,它的信号传递途径 … dan ishac scottsdale